Dertyghettokid

ok soo I just dropped in my lsvtec into my RHD SIR delsol transtop. and the first night I got it to work and used the transtop 4 or 5 times to make sure everything was working properly. Next day I put in the altonator and the catalytic converter light was on and all of a sudden the transtop wasnt working. 2 nights ago I had no idea what the light was but we ended up unhooking the altonator and reset the battery and it started working again. Hooked everything back up with the belt on this time and started the new motor and sure enough the top isnt working again. the trunk comes up and down put nothing when I try to use the switch. any suggestions on why this would be happening???