You are not ready for a rebuild yet my boy...you're just breaking in the motor.
You are probably due for spark plugs, valve adjustment, timing belt, water pump, transmission fluid change/flush, and check all fluids
You may want to find someone who knows hondas and walk you through stuff so you can learn hands on, or you may be looking at taking it to a mechanic to have the work done...
Read the FAQ's on this forum and jump over to (http://www.civicforums.com/forums/18...en-honda-civic
) and read their walkthroughs. You should be able to learn quite a bit from these!