I have a 2006 Honda CR-V with a leak that drips down from around my gas pedal every time it rains. I have already taken it in to be looked and and have ruled out a windshield leak and sunroof leak. Any ideas as to where the water is getting in from?

 

If the sunroof and windshield have been ruled out, I would think it's leaking somewhere from the cowl area.

Run a low pressure water hose to different areas of the cowl for a minute or so and see if you get water inside around the pedal.

 

There is a service bulletin regarding the passenger compartment front bulkhead not properly sealed. The fix is to remove the cowl and apply sealant to the entire exterior horizontal seam on the front bulkhead.

 

May not be it but there is also a clutch cutout hole above the gas pedal. It shouldn't be popped out in A/T but it is there, should be easy to check behind the black cladded sound dampening firewall pad. Should be easy enough to spot because the cutout is in the pad just unused, and if water is dripping through there from above you can rule it out by if it's wet above it or not.