so i ve made it to the re assembly portion of my build and pulled the aebs main studs out and read some instructions that said they need to be blueprinted before there installed due to bearing clearance but dont give details on how to follow through any help?

 

Engine Motor Blueprinting | Explaining the how to basics

Start here.

 

is it ok for one to be up a couple of threads higher than the rest of them.

 

No reason they should be really.
Main bolts are all the same length. The holes and threads should also be uniform.
The main studs should all be the same length.
I would clean the threads really well and see If you can't get them all the same installed height.
If for some reason you cant, a thread or 2 difference shouldn't affect the clamping force in all reality, but I would want to know why personally..

 

i cleaned it out chased it and everything, just not gonna go all the way down.i was trying to measure endplay on the crank and the manual says up to .014 and even though its not moving at all, the feeler gauge maeasured .008 on the front side of #4 like the manual says does that sound correct.

 

Measuring crank thrust is usually done with a dial indicator. I'd try it this way first to see what you get.