The rear motor mount bracket is touching the rear cross member.
I'm running the new AVID motor mounts but i dont think that thats the problem.
The car is a 91 civic with the b16 and J1 cable transmission. The directions told me to cut a small section of the rear crossmember but i cut about 1/2 inch off and some off the bracket on the back of the transmission but it is still hitting and the engine will not bolt in properly and is off centered.

I think that the rear bracket is the wrong one. It was missing off the motor and had to go back down there and get it. Did not see what car they took it off of.

Did not have this problem with any other swaps with the HAsport mounts.

 

snap a pic of it and we can tell you if it is the right one. If its not I have one if you need it 90-93 teg is what you need

 

yeah i was looking at my crx today with the hasport mounts and the 90-93 teg rear mount and it has alot of room behind it. The other one touched the rear lip of the mount and crossmember and the bolt for the motor mount in the rear. The instruction told me to cut the rear crossmember and I did but it still touches and the motor will not torque back since its hitting it solid.
I really think its the wrong bracket but has never happened to me before.
Just like I said though the mount was not on the eninge when i bought it.

 

If you could take a picture of this rear bracket so I can see the difference between the 90-93 and the one I have.