Both my doors had got hit so I bought new 6th gen doors not sure exactly what year they came off of. but the door are not even. the body lines line up but the fenders stick out and there were no shims on my old doors and I have adjusted the new ones as much as I can. So do they make shims for them cause I cant find any on line or at a junk yard or am i doing something wrong.

 

Try loosening the 2 bottom bolts under the side skirt and either pulling down on the fender or pushing it in a little by the side molding and then tightening the bolts up. Sometimes it takes a minute to get them adjusted right. I'd really have to see some pics of what your working with to really help you out. Are they OEM or aftermarket fenders?