I have a p06 vtec enabled that was socketted for a chip to work with crome. I now want to install the hondata s300. Will it work with the vtec functioning correct? On the website it says a standard p06 can be done but without vtec.

 

Yes, it will function perfectly because your ecu is converted to vtec.
Hondata is referring to using an alternate output with a relay to activate vtec on a p06 that doesn't have vtec hardware added to it to use the standard a4 vtec solenoid output.