What information can you guys give me for performing the swap myself. I've taken a look at the sheet metal and I can see the indentations. I've got info on the wiring, and I know all the parts I need. From my knowledge I need these parts:

Helms Shop Manual
Transmission Assmeble 97+
Transmission mounts front and rear
Flywheel and bolts (probably throw on aftermarket here)
Clutch Kit and bolts (aftermarket here as well)
Clutch Master cylinder
clutch slave cylinder
clutch dampner
vehicle speed sensor
reverse switch
Hydraulic Lines
Clutch Pedal Assembly
Brake Pedal Assembly
Shifter Assembly
Shift Linkage
5 speed manual 97+ ECU
5 speed intermediate shaft (half-shaft)
5 speed gauge cluster (might use mine to keep mileage accurate w/ aftermarket tach)
Cotter Pins (all sizes)
And of course all nuts and bolts

Most of these parts are connected to the tranny. Anyways if there is anything I am missing let me know.

Also who could give me a good deal on a good transmission for a guy who just got back from Iraq. Oh-Rah!!! Marine Corps

 

This is all I see that you are missing on your list (5spd Starter), and I found a 97 for 750.00 just the transmission. http://www.importautosalvage.com.