rod and main clearance
 

Ok so I'm building a b16a block and I got the color coded bearings from Honda. Now when I plastigauged my main bearings they came within spec. But the rod bearings read too small of a clearance. Any suggestions? I don't see how having the correct bearings could result in a smaller clearance.

Also since I have CTR pistons in this block, will I need to adjust my valves differently from the stock spec?