Hatchetman11

I have a 96 civic hatchback, it has a b18 and a gsr trans from an integra. I just replaced the trans and now all the gears are offset to the right, 3rd is hard to get into and i dont have reverse. Has anyone had this problem before? if so wat is it? i have one more thing to do and thats pull the linkage off and see if it shifts into reverse maually but besides that i cant figure out why everything is offset